Tin_g01538 (ATRABF1, RABF1, ARA6,...)

Aliases : ATRABF1, RABF1, ARA6, ATRAB5C, ARA-6

Description : vesicle tethering small GTPase *(RAB5) & original description: none

Gene families : OG0007224 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007224_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g01538

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00165050	ATRABF1, RABF1,...	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Ala_g13809	ATRABF1, RABF1,...	vesicle tethering small GTPase *(RAB5) & original...	0.03	OrthoFinder output from all 47 species
Aop_g06217	ATRABF1, RABF1,...	vesicle tethering small GTPase *(RAB5) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0167.g054550	ATRABF1, RABF1,...	vesicle tethering small GTPase *(RAB5) & original...	0.03	OrthoFinder output from all 47 species
Ceric.09G096600.1	ATRABF1, RABF1,...	vesicle tethering small GTPase *(RAB5) & original...	0.05	OrthoFinder output from all 47 species
Nbi_g42869	ATRABF1, RABF1,...	vesicle tethering small GTPase *(RAB5) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e038988_P002	ATRABF1, RABF1,...	F-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	29	189

External Links

No external refs found!