Tin_g00564

Description : component *(eIF3j) of eIF3 mRNA-to-PIC binding complex & original description: none

Gene families : OG0003438 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003438_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g00564

Target	Alias	Description	ECC score	Gene Family Method
AT1G66070	No alias	Translation initiation factor eIF3 subunit	0.02	OrthoFinder output from all 47 species
AT5G37475	No alias	Translation initiation factor eIF3 subunit	0.01	OrthoFinder output from all 47 species
Cba_g33154	No alias	component *(eIF3j) of eIF3 mRNA-to-PIC binding complex &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000903.26	No alias	Protein biosynthesis.translation...	0.01	OrthoFinder output from all 47 species
Cre06.g308850	No alias	Protein biosynthesis.translation...	0.03	OrthoFinder output from all 47 species
LOC_Os02g02990.1	LOC_Os02g02990	component eIF3j of eIF3 mRNA-to-PIC binding complex	0.02	OrthoFinder output from all 47 species
Lfl_g10645	No alias	component *(eIF3j) of eIF3 mRNA-to-PIC binding complex &...	0.01	OrthoFinder output from all 47 species
Mp6g18380.1	No alias	component eIF3j of eIF3 mRNA-to-PIC binding complex	0.01	OrthoFinder output from all 47 species
Ore_g15745	No alias	component *(eIF3j) of eIF3 mRNA-to-PIC binding complex &...	0.02	OrthoFinder output from all 47 species
Pir_g56409	No alias	component *(eIF3j) of eIF3 mRNA-to-PIC binding complex &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003743	translation initiation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEA	Interproscan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004659	prenyltransferase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
MF	GO:0008318	protein prenyltransferase activity	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
BP	GO:0018342	protein prenylation	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0097354	prenylation	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013906	eIF3j	1	222

External Links

No external refs found!