Tin_g00452 (AGL3, SEP4)

Aliases : AGL3, SEP4

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g00452

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00047p00181740	AGL7, AP1,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
Ala_g28879	AGL21	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g11193	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g16338	AGL13	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g61790	AGL6	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene63673.t1	STK, AGL11,...	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0073.g037211	AGL104	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0242.g059800	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Cba_g09207	AGL13	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g47493	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.07G004300.1	AGL10, CAL1,...	not classified & original description: pacid=50627317...	0.03	OrthoFinder output from all 47 species
Ceric.12G051700.1	Ceric.12G051700	not classified & original description: pacid=50600703...	0.02	OrthoFinder output from all 47 species
Ceric.12G051800.1	GL19, AGL19,...	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.27G042700.1	AGL7, AP1,...	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.27G057900.1	STK, AGL11,...	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dde_g08748	AGL9, SEP3	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g50123	AGL3, SEP4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01025945001	STK, AGL11	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
LOC_Os02g45770.1	AGL6, LOC_Os02g45770	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os05g34940.1	PI, LOC_Os05g34940	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_2986g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Pir_g19814	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g36826	AGL65	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g30733	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g54366	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g61246	AGL21	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003429	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Smo437868	AGL29	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Solyc01g106720.1.1	AGL62, Solyc01g106720	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Tin_g20318	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e032487_P001	AGL61, DIA,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e033123_P001	AGL32, TT16,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e039610_P001	AGL8, FUL, Zm00001e039610	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	87	160

External Links

No external refs found!

Tin_g00452 (AGL3, SEP4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation