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  5. Tin_g00295

Tin_g00295 (PRA1.B2)


Aliases : PRA1.B2

Description : B-G-class Rab-GDF protein & original description: none


Gene families : OG0000542 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000542_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g00295

Target Alias Description ECC score Gene Family Method Actions
AT5G01640 PRA1.B5 prenylated RAB acceptor 1.B5 0.03 OrthoFinder output from all 47 species
Aop_g06559 PRA1.B1 B-G-class Rab-GDF protein & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene28428.t1 PRA1.B2, Aspi01Gene28428 B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04042 PRA1.B1 B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17580 PRA1.B1 B-G-class Rab-GDF protein & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g08254 PRA1.B5 B-G-class Rab-GDF protein & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR004895 Prenylated_rab_accept_PRA1 34 175
No external refs found!