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  5. Pir_g63381

Pir_g63381


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g63381

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00127120 CRR22,... Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AMTR_s03531p00004900 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.02 OrthoFinder output from all 47 species
Adi_g015988 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06657 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g03960 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17653 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g17656 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18401 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54924 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11093 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g14243 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23683 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25194 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68117 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70449 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009910 EMB2758 not classified & original description: CDS=1-1803 0.03 OrthoFinder output from all 47 species
Azfi_s0652.g081079 No alias not classified & original description: CDS=1-2169 0.02 OrthoFinder output from all 47 species
Azfi_s1835.g107332 CRR22 not classified & original description: CDS=1-2094 0.03 OrthoFinder output from all 47 species
Cba_g03312 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g12686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g27798 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75392 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G010600.1 CRR22, Ceric.09G010600 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G046000.1 CRR22, Ceric.10G046000 ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.19G076100.1 Ceric.19G076100 not classified & original description: pacid=50575482... 0.02 OrthoFinder output from all 47 species
Ceric.36G022000.1 Ceric.36G022000 not classified & original description: pacid=50568812... 0.03 OrthoFinder output from all 47 species
Dac_g36036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47718 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28812 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g31027 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g38218 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g08595 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24653 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33724 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g36973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09949 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g20820 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28092 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g32009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g36039 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10444 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g38472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g44509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09916 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20007 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42872 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16145 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g22848 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04004 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06505 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13340 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14215 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42752 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g43670 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g48448 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53384 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53708 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55034 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56808 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59290 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59328 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61267 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61597 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g64055 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g01747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27658 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo26969 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Spa_g20273 LPA66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g32786 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33790 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 178 225
IPR002885 Pentatricopeptide_repeat 281 327
IPR002885 Pentatricopeptide_repeat 75 122
IPR046848 E_motif 502 562
IPR002885 Pentatricopeptide_repeat 383 429
IPR002885 Pentatricopeptide_repeat 255 280
IPR002885 Pentatricopeptide_repeat 50 72
IPR002885 Pentatricopeptide_repeat 457 480
No external refs found!