Pir_g62948

Description : pectin methylesterase & original description: none

Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g62948

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00140p00036490	evm_27.TU.AmTr_v1...	Probable pectinesterase 8 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT3G24130	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g003309	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g17009	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g20602	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g11546	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g25225	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01015852001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
MA_16389g0020	No alias	pectin methylesterase	0.03	OrthoFinder output from all 47 species
MA_66089g0010	No alias	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Zm00001e033546_P001	Zm00001e033546	pectin methylesterase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	67	353

External Links

No external refs found!