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  5. Pir_g53534

Pir_g53534 (ATRD22, RD22)


Aliases : ATRD22, RD22

Description : not classified & original description: none


Gene families : OG0000218 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000218_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g53534
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00088650 ATRD22, RD22,... BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
AT1G23760 JP630, PG3 BURP domain-containing protein 0.04 OrthoFinder output from all 47 species
AT1G60390 PG1 polygalacturonase 1 0.03 OrthoFinder output from all 47 species
Aev_g11669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04221 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g63303 PG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56826.t1 PG2, Aspi01Gene56826 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56875.t1 PG2, Aspi01Gene56875 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0084.g039069 No alias not classified & original description: CDS=1-924 0.03 OrthoFinder output from all 47 species
Ceric.10G059100.1 ATRD22, RD22,... not classified & original description: pacid=50612935... 0.03 OrthoFinder output from all 47 species
Dac_g14261 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01035686001 ATRD22, RD22 BURP domain protein RD22 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_06614 PG2 BURP domain-containing protein 16 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
LOC_Os05g13490.1 LOC_Os05g13490 BURP domain-containing protein 8 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
LOC_Os08g29200.1 PG2, LOC_Os08g29200 non-catalytic polygalacturonase regulator 0.02 OrthoFinder output from all 47 species
Len_g23146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10182290g0010 PG2 BURP domain-containing protein 16 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
MA_462957g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_5913418g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_63321g0010 ATRD22, RD22 BURP domain protein RD22 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_8888577g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g22587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g21957 USPL1, ATUSPL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g068130.1.1 ATRD22, RD22,... BURP domain-containing protein 3 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Spa_g12001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22747 PG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30033 ATRD22, RD22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g37245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g42316 PG1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e033843_P001 PG2, Zm00001e033843 non-catalytic polygalacturonase regulator 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR004873 BURP_dom 86 190
No external refs found!