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  5. Pir_g53337

Pir_g53337


Description : plant-specific E3 ubiquitin ligase *(RSL/RFA) & original description: none


Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g53337
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AT3G43750 No alias RING/U-box protein with C6HC-type zinc finger domain 0.02 OrthoFinder output from all 47 species
AT3G45490 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.03 OrthoFinder output from all 47 species
AT5G07640 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.20 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g13139 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.04 OrthoFinder output from all 47 species
Smo48392 No alias ATP-dependent RNA helicase DEAH12, chloroplastic... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004506 squalene monooxygenase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
BP GO:0019627 urea metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
CC GO:0035550 urease complex IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043419 urea catabolic process IEP HCCA
BP GO:0043605 amide catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0071941 nitrogen cycle metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 155 266
IPR002867 IBR_dom 381 440
IPR002867 IBR_dom 457 508
No external refs found!