Pir_g52860 (RPS18A, PFL, PFL1)

Aliases : RPS18A, PFL, PFL1

Description : not classified & original description: none

Gene families : OG0001648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001648_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g52860
Cluster	HCCA: Cluster_139

Target	Alias	Description	ECC score	Gene Family Method
Als_g13802	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g07943	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cre06.g272950	RPS18A, PFL, PFL1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
LOC_Os03g58050.1	RPS18A, PFL,...	component RPS18 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp5g02820.1	RPS18A, PFL, PFL1	component RPS18 of SSU proteome	0.02	OrthoFinder output from all 47 species
Msp_g34156	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c16_2090V3.1	RPS18A, PFL,...	Ribosomal protein S13/S18 family	0.02	OrthoFinder output from all 47 species
Pp3c6_21770V3.1	RPS18A, PFL,...	Ribosomal protein S13/S18 family	0.02	OrthoFinder output from all 47 species
Ppi_g50225	RPS18A, PFL, PFL1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e005967_P001	RPS18A, PFL,...	component RPS18 of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005230	extracellular ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0022834	ligand-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	15	105

External Links

No external refs found!

Pir_g52860 (RPS18A, PFL, PFL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation