Pir_g51528 (ATMSH2, MSH2)


Aliases : ATMSH2, MSH2

Description : component *(MSH2) of MSH2-x mismatch repair heterodimers & original description: none


Gene families : OG0004193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004193_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g51528
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
Ppi_g12971 ATMSH2, MSH2 component *(MSH2) of MSH2-x mismatch repair heterodimers... 0.04 OrthoFinder output from all 47 species
Smo407609 ATMSH2, MSH2 DNA mismatch repair protein MSH2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006821 chloride transport IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
InterPro domains Description Start Stop
IPR007695 DNA_mismatch_repair_MutS-lik_N 30 135
IPR007696 DNA_mismatch_repair_MutS_core 307 611
IPR007861 DNA_mismatch_repair_MutS_clamp 475 569
IPR000432 DNA_mismatch_repair_MutS_C 667 868
IPR007860 DNA_mmatch_repair_MutS_con_dom 150 289
No external refs found!