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  5. Pir_g44296

Pir_g44296 (HVT1, ATVT-1)


Aliases : HVT1, ATVT-1

Description : not classified & original description: none


Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g44296

Target Alias Description ECC score Gene Family Method Actions
AT1G06670 NIH nuclear DEIH-boxhelicase 0.03 OrthoFinder output from all 47 species
AT2G30800 HVT1, ATVT-1 helicase in vascular tissue and tapetum 0.02 OrthoFinder output from all 47 species
Adi_g089369 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10871 HVT1, ATVT-1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g16503 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20539 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16527 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12887 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020822001 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os01g56190.1 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Lfl_g02414 HVT1, ATVT-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10434659g0010 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp3g02150.1 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g26937 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g18268 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007644 HVT1, ATVT-1 not classified & original description: CDS=76-3780 0.05 OrthoFinder output from all 47 species
Sam_g16176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo50132 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Spa_g10294 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19921 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 964 1051
IPR007502 Helicase-assoc_dom 804 877
IPR001650 Helicase_C 621 739
IPR011545 DEAD/DEAH_box_helicase_dom 254 409
IPR001374 R3H_dom 88 144
No external refs found!