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  5. Pir_g43931

Pir_g43931 (HTR12, CENH3)


Aliases : HTR12, CENH3

Description : histone H3 variant *(CENH3) & original description: none


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g43931

Target Alias Description ECC score Gene Family Method Actions
AT1G01370 HTR12, CENH3 Histone superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G13370 No alias Histone superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G19890 ATMGH3, MGH3 male-gamete-specific histone H3 0.02 OrthoFinder output from all 47 species
Ceric.14G050900.1 Ceric.14G050900 histone *(H3) & original description: pacid=50633164... 0.04 OrthoFinder output from all 47 species
Ceric.14G051700.1 Ceric.14G051700 histone *(H3) & original description: pacid=50633391... 0.03 OrthoFinder output from all 47 species
Ceric.1Z286600.1 Ceric.1Z286600 not classified & original description: pacid=50632714... 0.04 OrthoFinder output from all 47 species
Dde_g12203 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g24157 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g11410.1 No alias histone (H3) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 25 149
No external refs found!