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  5. Pir_g43887

Pir_g43887


Description : REM-type transcription factor & original description: none


Gene families : OG0004345 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004345_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g43887
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Adi_g078266 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc00g011660.1.1 Solyc00g011660 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc00g500092.1.1 Solyc00g500092 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 20 105
IPR003340 B3_DNA-bd 458 547
IPR003340 B3_DNA-bd 233 326
No external refs found!