Pir_g40304 (GL19, AGL19)

Aliases : GL19, AGL19

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g40304
Cluster	HCCA: Cluster_34

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00254030	SHP2, AGL5,...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
AT2G45660	SOC1, AGL20, ATSOC1	AGAMOUS-like 20	0.08	OrthoFinder output from all 47 species
AT4G22950	GL19, AGL19	AGAMOUS-like 19	0.04	OrthoFinder output from all 47 species
Aev_g07052	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g26927	AGL16	MADS/AGL-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Als_g36973	AGL3, SEP4	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g50829	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene17774.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene17800.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene59880.t1	AGL65, Aspi01Gene59880	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0684.g082058	AGL21	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.36G037400.1	ANR1, AGL44,...	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g32401	AGL10, CAL1, CAL	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01005934001	SVP, AGL22	RNA biosynthesis.transcriptional activation.MADS box...	0.06	OrthoFinder output from all 47 species
GSVIVT01012110001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01026207001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01027579001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01037034001	AGL62	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
Gb_31417	AGL66	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os06g22760.1	AGL61, DIA,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_10432817g0010	SVP, AGL22	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_138440g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003069	No alias	not classified & original description: CDS=1-255	0.02	OrthoFinder output from all 47 species
Solyc07g150138.1.1	Solyc07g150138	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Spa_g55783	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e011565_P001	AGL7, AP1, Zm00001e011565	MADS-box transcription factor 15 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Zm00001e014926_P001	AGL16, Zm00001e014926	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e015924_P003	SVP, AGL22,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e016529_P004	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e022819_P002	AGL16, Zm00001e022819	transcription factor (MADS/AGL)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	80	159

External Links

No external refs found!

Pir_g40304 (GL19, AGL19)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation