1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g36408

Pir_g36408


Description : subfamily ABCG transporter & original description: none


Gene families : OG0000438 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000438_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g36408

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00134p00069640 ABCG25,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AT3G25620 No alias ABC-2 type transporter family protein 0.02 OrthoFinder output from all 47 species
Aspi01Gene09991.t1 Aspi01Gene09991 subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0073.g037209 No alias subfamily ABCG transporter & original description: CDS=211-2310 0.05 OrthoFinder output from all 47 species
Ceric.13G008600.1 Ceric.13G008600 subfamily ABCG transporter & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.34G074000.1 Ceric.34G074000 not classified & original description: pacid=50622980... 0.03 OrthoFinder output from all 47 species
Cre17.g717050 No alias ABC transporter G family member 21 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_38402 ABCG14 subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
LOC_Os08g07010.1 ABCG14, LOC_Os08g07010 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Nbi_g01338 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37168 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20978 No alias subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015589 No alias not classified & original description: CDS=22-1557 0.04 OrthoFinder output from all 47 species
Spa_g18374 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004664 prephenate dehydratase activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009094 L-phenylalanine biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 217 371
IPR043926 ABCG_dom 400 459
IPR013525 ABC_2_trans 537 746
No external refs found!