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  5. Pir_g30352

Pir_g30352


Description : regulatory protein *(ZC11A) of mRNA export & original description: none


Gene families : OG0001116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001116_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g30352

Target Alias Description ECC score Gene Family Method Actions
AT2G02160 No alias CCCH-type zinc finger family protein 0.03 OrthoFinder output from all 47 species
Adi_g059322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g35518 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Als_g33970 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Als_g62748 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.04 OrthoFinder output from all 47 species
Aob_g11153 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0064.g035695 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Ceric.21G028800.1 Ceric.21G028800 regulatory protein *(ZC11A) of mRNA export & original... 0.05 OrthoFinder output from all 47 species
Ceric.23G004600.1 Ceric.23G004600 regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Dcu_g24147 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.04 OrthoFinder output from all 47 species
Lfl_g04207 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.04 OrthoFinder output from all 47 species
Lfl_g04919 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Lfl_g04961 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
MA_17019g0010 No alias C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Mp2g02990.1 No alias C3H zinc finger transcription factor. regulatory... 0.04 OrthoFinder output from all 47 species
Nbi_g43269 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Ppi_g28993 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008491 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0220.g026153 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Sam_g09314 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.05 OrthoFinder output from all 47 species
Sam_g10252 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Sam_g12012 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Sam_g17521 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Sam_g27203 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.04 OrthoFinder output from all 47 species
Smo441325 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Solyc01g008170.3.1 Solyc01g008170 C3H zinc finger transcription factor. regulatory... 0.05 OrthoFinder output from all 47 species
Solyc04g008550.4.1 Solyc04g008550 C3H zinc finger transcription factor. regulatory... 0.02 OrthoFinder output from all 47 species
Spa_g30365 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Spa_g48975 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.05 OrthoFinder output from all 47 species
Spa_g56762 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Tin_g10549 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Zm00001e023520_P001 Zm00001e023520 C3H zinc finger transcription factor. regulatory... 0.03 OrthoFinder output from all 47 species
Zm00001e041908_P001 Zm00001e041908 C3H zinc finger transcription factor. regulatory... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 109 133
IPR041686 Znf-CCCH_3 7 63
No external refs found!