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  5. Pir_g28452

Pir_g28452 (PUB38, ATPUB38)


Aliases : PUB38, ATPUB38

Description : U-Box-group-II E3 ubiquitin ligase & original description: none


Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g28452
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Ehy_g03795 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16204 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Gb_16859 PUB38, ATPUB38 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os06g13080.1 PUB39, LOC_Os06g13080 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990316 Atg1/ULK1 kinase complex IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 354 391
IPR003613 Ubox_domain 28 96
No external refs found!