Pir_g28388 (RAP2.4)

Aliases : RAP2.4

Description : subgroup ERF-I transcription factor & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g28388

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00095120	ERF110,...	Ethylene-responsive transcription factor ERF110...	0.02	OrthoFinder output from all 47 species
AMTR_s00040p00196580	HRD,...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
Adi_g045252	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Adi_g074655	HRD	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aev_g41268	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g36155	Rap2.6L	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene18475.t1	Aspi01Gene18475	subgroup ERF-V transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene21143.t1	ATERF4, RAP2.5,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene23166.t1	DREB26, Aspi01Gene23166	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene34453.t1	Aspi01Gene34453	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene47230.t1	TINY2, Aspi01Gene47230	subgroup ERF-III transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene47256.t1	tny, Aspi01Gene47256	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene51266.t1	Aspi01Gene51266	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene57065.t1	ATERF12, ERF12,...	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000091	ATERF-9, ERF9, ATERF9	not classified & original description: CDS=1-585	0.03	OrthoFinder output from all 47 species
Ceric.28G013900.1	Ceric.28G013900	subgroup ERF-V transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.39G001200.1	ATERF-9, ERF9,...	not classified & original description: pacid=50583216...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000093.224	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000984.2	No alias	No description available	0.02	OrthoFinder output from all 47 species
Ehy_g00325	ATERF-9, ERF9, ATERF9	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g07535	ATERF3, ERF3	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ehy_g08401	No alias	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g08445	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g10951	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Ehy_g11833	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Ehy_g15133	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Ehy_g18185	TINY2	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ehy_g27325	No alias	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.04	OrthoFinder output from all 47 species
Ehy_g30923	DREB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01017315001	WIN1, SHN1	Cell wall.cutin and suberin.biosynthesis...	0.03	OrthoFinder output from all 47 species
GSVIVT01028316001	No alias	No description available	0.02	OrthoFinder output from all 47 species
Gb_03645	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.04	OrthoFinder output from all 47 species
Gb_08031	tny	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
LOC_Os05g25260.1	ATERF3, ERF3,...	transcription factor (ERF)	0.04	OrthoFinder output from all 47 species
LOC_Os07g42510.1	RAP2.12, LOC_Os07g42510	transcription factor (ERF)	0.04	OrthoFinder output from all 47 species
Len_g53710	CRF3	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10426586g0010	ERF7, ATERF7, ATERF-7	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
MA_113446g0010	ORA47	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species
MA_130669g0010	No alias	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
MA_2128446g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp5g11100.1	ATERF4, RAP2.5,...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Ore_g07819	DREB2A, DREB2	subgroup ERF-IV/DREB2 transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ore_g29062	ATERF-9, ERF9, ATERF9	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g29063	ATERF11, ERF11	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g44016	ATERF3, ERF3	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g25005	No alias	subgroup ERF-IX transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g43460	DREB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g33487	No alias	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0130.g022062	No alias	subgroup ERF-VI transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023147	No alias	not classified & original description: CDS=1-1539	0.03	OrthoFinder output from all 47 species
Sam_g15417	No alias	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc03g093540.1.1	Solyc03g093540	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc05g050790.3.1	ATERF13, ERF13,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Spa_g21493	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Tin_g04619	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g28929	CRF4	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0010921	regulation of phosphatase activity	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051336	regulation of hydrolase activity	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	170	218

External Links

No external refs found!

Pir_g28388 (RAP2.4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation