1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g23580

Pir_g23580 (RIN4)


Aliases : RIN4

Description : regulatory factor *(RIN4) guarded by RPM1/RPS2 activities & original description: none


Gene families : OG0000509 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000509_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g23580
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
Aev_g07142 NOI not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08287 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.04 OrthoFinder output from all 47 species
Als_g35611 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.03 OrthoFinder output from all 47 species
Aop_g70445 NOI not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene12669.t1 Aspi01Gene12669 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g00447 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_02314 RIN4 RIN4 effector-triggered immunity RPM1-interacting factor 0.03 OrthoFinder output from all 47 species
Pnu_g05945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g083390.4.1 RIN4, Solyc06g083390 RIN4 effector-triggered immunity RPM1-interacting factor 0.03 OrthoFinder output from all 47 species
Solyc09g059430.3.1 RIN4, Solyc09g059430 RIN4 effector-triggered immunity RPM1-interacting factor 0.02 OrthoFinder output from all 47 species
Zm00001e036855_P001 Zm00001e036855 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR008700 TypeIII_avirulence_cleave 188 221
No external refs found!