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  5. Pir_g23080

Pir_g23080


Description : component *(uS12) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002074 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002074_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g23080

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00204160 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT5G02960 No alias Ribosomal protein S12/S23 family protein 0.03 OrthoFinder output from all 47 species
Adi_g052910 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.19G078000.1 Ceric.19G078000 component *(uS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001264.27 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Cre12.g504200 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01025120001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01025626001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Gb_02361 No alias component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os01g61814.1 LOC_Os01g61814 component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os03g60400.1 LOC_Os03g60400 component RPS23 of SSU proteome 0.04 OrthoFinder output from all 47 species
MA_10436470g0020 No alias component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
MA_19871g0020 No alias component RPS23 of SSU proteome 0.04 OrthoFinder output from all 47 species
MA_9043057g0010 No alias component RPS23 of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp2g08680.1 No alias component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
Msp_g40932 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Solyc10g086020.3.1 Solyc10g086020 component RPS23 of SSU proteome 0.04 OrthoFinder output from all 47 species
Tin_g03594 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Tin_g26329 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e006170_P001 Zm00001e006170 component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e011770_P001 Zm00001e011770 component RPS23 of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e019377_P001 Zm00001e019377 component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e027265_P001 Zm00001e027265 component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005740 mitochondrial envelope IEP HCCA
CC GO:0005751 mitochondrial respiratory chain complex IV IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006123 mitochondrial electron transport, cytochrome c to oxygen IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019646 aerobic electron transport chain IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
MF GO:0032422 purine-rich negative regulatory element binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0045277 respiratory chain complex IV IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 57 168
No external refs found!