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  5. Pir_g22828

Pir_g22828


Description : regulatory protein *(BDR) involved in RNA polymerase-II transcription & original description: none


Gene families : OG0002847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002847_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g22828
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT5G25520 No alias SPOC domain / Transcription elongation factor S-II protein 0.03 OrthoFinder output from all 47 species
Ala_g02676 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.03 OrthoFinder output from all 47 species
Aspi01Gene31250.t1 Aspi01Gene31250 regulatory protein *(BDR) involved in RNA polymerase-II... 0.03 OrthoFinder output from all 47 species
Aspi01Gene31394.t1 Aspi01Gene31394 regulatory protein *(BDR) involved in RNA polymerase-II... 0.04 OrthoFinder output from all 47 species
GSVIVT01035723001 No alias No description available 0.04 OrthoFinder output from all 47 species
Len_g11236 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g36175 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016191 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.03 OrthoFinder output from all 47 species
Sam_g36170 No alias regulatory protein *(BDR) involved in RNA polymerase-II... 0.02 OrthoFinder output from all 47 species
Solyc07g007850.2.1 Solyc07g007850 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
MF GO:0004146 dihydrofolate reductase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009396 folic acid-containing compound biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046653 tetrahydrofolate metabolic process IEP HCCA
BP GO:0046654 tetrahydrofolate biosynthetic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003618 TFIIS_cen_dom 325 419
IPR012921 SPOC_C 623 768
No external refs found!