1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g18899

Pir_g18899 (LD)


Aliases : LD

Description : flowering time factor *(LD) & original description: none


Gene families : OG0006989 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006989_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g18899

Target Alias Description ECC score Gene Family Method Actions
Ala_g25551 LD flowering time factor *(LD) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.26G026900.1 LD, Ceric.26G026900 flowering time factor *(LD) & original description:... 0.03 OrthoFinder output from all 47 species
LOC_Os01g70810.1 LD, LOC_Os01g70810 transcription factor (LD) 0.04 OrthoFinder output from all 47 species
Lfl_g02445 LD flowering time factor *(LD) & original description: none 0.06 OrthoFinder output from all 47 species
MA_8101g0030 LD transcription factor (LD) 0.01 OrthoFinder output from all 47 species
Mp5g13160.1 LD transcription factor (LD). C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Nbi_g27547 LD flowering time factor *(LD) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g02417 LD flowering time factor *(LD) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013976 LD flowering time factor *(LD) & original description: CDS=188-3766 0.03 OrthoFinder output from all 47 species
Sam_g26577 No alias flowering time factor *(LD) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g074690.3.1 LD, Solyc09g074690 transcription factor (LD) 0.02 OrthoFinder output from all 47 species
Zm00001e018725_P004 LD, Zm00001e018725 transcription factor (LD) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!