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  5. Pir_g17927

Pir_g17927 (ATML1)


Aliases : ATML1

Description : HD-ZIP IV-type transcription factor & original description: none


Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g17927

Target Alias Description ECC score Gene Family Method Actions
Als_g16392 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08849 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31271 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_29468 ANL2, AHDP transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Msp_g47131 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006777 ATML1 HD-ZIP IV-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Tin_g01261 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041435_P003 HDG1, HD-GL2-1,... transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008289 lipid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 80 131
IPR002913 START_lipid-bd_dom 256 476
No external refs found!