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  5. Pir_g17712

Pir_g17712 (PTAC6)


Aliases : PTAC6

Description : cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6) & original description: none


Gene families : OG0007877 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007877_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g17712

Target Alias Description ECC score Gene Family Method Actions
AT1G21600 PTAC6 plastid transcriptionally active 6 0.03 OrthoFinder output from all 47 species
Adi_g013738 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g008949 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Cba_g25899 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Ceric.38G052000.1 PTAC6, Ceric.38G052000 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Dcu_g39158 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.04 OrthoFinder output from all 47 species
GSVIVT01008807001 PTAC6 RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 OrthoFinder output from all 47 species
Len_g04695 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.05 OrthoFinder output from all 47 species
Mp8g10030.1 PTAC6 PAP8/TAC6 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Nbi_g00889 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.06 OrthoFinder output from all 47 species
Ore_g40614 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Ppi_g00691 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Solyc04g057870.3.1 PTAC6, Solyc04g057870 PAP8/TAC6 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Spa_g09727 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006535 cysteine biosynthetic process from serine IEP HCCA
BP GO:0006563 L-serine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0009001 serine O-acetyltransferase activity IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016412 serine O-acyltransferase activity IEP HCCA
MF GO:0016413 O-acetyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!