Pir_g17440 (BBC1, RSU2, ATBBC1)

Aliases : BBC1, RSU2, ATBBC1

Description : component *(eL13) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000911 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000911_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g17440

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00239970	BBC1, RSU2,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AMTR_s00029p00111280	BBC1, RSU2,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
AT3G49010	BBC1, RSU2, ATBBC1	breast basic conserved 1	0.07	OrthoFinder output from all 47 species
AT5G23900	No alias	Ribosomal protein L13e family protein	0.06	OrthoFinder output from all 47 species
Adi_g014302	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g07445	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g38739	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g02247	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g02822	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g02719	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0050.g031133	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cba_g65571	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.21G071200.1	BBC1, RSU2,...	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.38G000300.1	BBC1, RSU2,...	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020629.36	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Dac_g06660	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dac_g15740	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g26018	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01027212001	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01030767001	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
LOC_Os06g02510.2	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.06	OrthoFinder output from all 47 species
MA_10430790g0030	BBC1, RSU2, ATBBC1	component RPL13 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Mp1g04920.1	BBC1, RSU2, ATBBC1	component RPL13 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Mp2g19790.1	BBC1, RSU2, ATBBC1	component RPL13 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Msp_g00929	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g00223	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g11184	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c1_26280V3.1	BBC1, RSU2,...	breast basic conserved 1	0.05	OrthoFinder output from all 47 species
Ppi_g13318	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g19558	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000099	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g17931	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g20834	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo165483	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Smo266648	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Solyc08g075700.3.1	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Solyc12g096150.2.1	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Spa_g05295	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g14938	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Spa_g24037	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Tin_g01593	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Tin_g03031	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e018804_P001	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Zm00001e028430_P003	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e031172_P001	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001380	Ribosomal_L13e	6	184

External Links

No external refs found!

Pir_g17440 (BBC1, RSU2, ATBBC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation