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  5. Pir_g17386

Pir_g17386


Description : chromatin remodeling factor *(Ris1) & original description: none


Gene families : OG0003006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003006_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g17386

Target Alias Description ECC score Gene Family Method Actions
AT1G50410 No alias SNF2 domain-containing protein / helicase... 0.02 OrthoFinder output from all 47 species
Aev_g34337 No alias chromatin remodeling factor *(Ris1) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g03860 EDA16 chromatin remodeling factor *(Ris1) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g01193 EDA16 chromatin remodeling factor *(Ris1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02925 EDA16 chromatin remodeling factor *(Ris1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0221.g058736 EDA16 chromatin remodeling factor *(Ris1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.28G036100.1 Ceric.28G036100 chromatin remodeling factor *(Ris1) & original... 0.05 OrthoFinder output from all 47 species
Cre01.g046237 No alias Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01034370001 No alias Chromatin organisation.chromatin remodeling... 0.06 OrthoFinder output from all 47 species
Gb_33076 No alias chromatin remodeling factor (Ris1) 0.03 OrthoFinder output from all 47 species
LOC_Os01g57110.1 EDA16, LOC_Os01g57110 chromatin remodeling factor (Ris1) 0.02 OrthoFinder output from all 47 species
LOC_Os08g08220.1 LOC_Os08g08220 chromatin remodeling factor (Rad5). chromatin remodeling... 0.05 OrthoFinder output from all 47 species
MA_4534g0010 No alias Helicase-like transcription factor CHR28 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp8g05230.1 No alias chromatin remodeling factor (Ris1) 0.02 OrthoFinder output from all 47 species
Solyc02g050280.4.1 Solyc02g050280 chromatin remodeling factor (Ris1) 0.03 OrthoFinder output from all 47 species
Zm00001e021657_P003 Zm00001e021657 chromatin remodeling factor (Rad5). chromatin remodeling... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015914 phospholipid transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 802 839
IPR000330 SNF2_N 370 764
IPR001650 Helicase_C 922 1021
No external refs found!