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  5. Pir_g16959

Pir_g16959


Description : not classified & original description: none


Gene families : OG0005122 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005122_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g16959
Cluster HCCA: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
Cba_g23527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.36G033800.1 Ceric.36G033800 not classified & original description: pacid=50568757... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021070.69 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Cre01.g046652 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Dac_g14703 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01340 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g04354 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01038277001 No alias Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Len_g13883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g26186 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g24710.1 No alias Probable methionine--tRNA ligase OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Ppi_g59684 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g09987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g015960.3.1 Solyc08g015960 Probable methionine--tRNA ligase OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Spa_g00639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e040540_P001 Zm00001e040540 Probable methionine--tRNA ligase OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP HCCA
BP GO:0017006 protein-tetrapyrrole linkage IEP HCCA
BP GO:0017007 protein-bilin linkage IEP HCCA
BP GO:0017009 protein-phycocyanobilin linkage IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR002547 tRNA-bd_dom 95 190
No external refs found!