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  5. Pir_g16510

Pir_g16510 (SC35, ATSC35, At-SC35)


Aliases : SC35, ATSC35, At-SC35

Description : not classified & original description: none


Gene families : OG0001818 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001818_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g16510

Target Alias Description ECC score Gene Family Method Actions
AT5G64200 SC35, ATSC35, At-SC35 ortholog of human splicing factor SC35 0.03 OrthoFinder output from all 47 species
Adi_g014954 SC35, ATSC35, At-SC35 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g20964 SC35, ATSC35, At-SC35 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0333.g065432 SC35, ATSC35, At-SC35 not classified & original description: CDS=1-1344 0.03 OrthoFinder output from all 47 species
Cba_g19500 SC35, ATSC35, At-SC35 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.15G003400.1 SC35, ATSC35,... not classified & original description: pacid=50640903... 0.03 OrthoFinder output from all 47 species
Dcu_g14869 SC35, ATSC35, At-SC35 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g07538 SC35, ATSC35, At-SC35 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g26670 SC35, ATSC35, At-SC35 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10426661g0020 SC35, ATSC35, At-SC35 Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013496 SC35, ATSC35, At-SC35 not classified & original description: CDS=98-997 0.02 OrthoFinder output from all 47 species
Sam_g43196 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g105140.3.1 SC35, ATSC35,... Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e001872_P001 SC35, ATSC35,... Serine/arginine-rich splicing factor SC35 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 133 194
No external refs found!