1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g15540

Pir_g15540


Description : not classified & original description: none


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g15540

Target Alias Description ECC score Gene Family Method Actions
Adi_g014373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g024716 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02562 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20301 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21372 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32445 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18763 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g40125 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g40163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54731 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29411 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g31272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0131.g049164 No alias not classified & original description: CDS=1-2763 0.02 OrthoFinder output from all 47 species
Azfi_s0250.g060258 No alias not classified & original description: CDS=1-1893 0.02 OrthoFinder output from all 47 species
Azfi_s0345.g065805 No alias not classified & original description: CDS=1-2679 0.02 OrthoFinder output from all 47 species
Azfi_s0469.g072874 CRR22 not classified & original description: CDS=1-1206 0.02 OrthoFinder output from all 47 species
Azfi_s1399.g102577 No alias not classified & original description: CDS=1-951 0.02 OrthoFinder output from all 47 species
Cba_g07644 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g19547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20804 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20866 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g44526 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g46047 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67890 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67908 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67911 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75128 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G037400.1 Ceric.02G037400 not classified & original description: pacid=50584425... 0.03 OrthoFinder output from all 47 species
Ceric.03G033500.1 Ceric.03G033500 not classified & original description: pacid=50573115... 0.04 OrthoFinder output from all 47 species
Ceric.09G002900.1 Ceric.09G002900 not classified & original description: pacid=50586532... 0.03 OrthoFinder output from all 47 species
Ceric.10G031100.1 Ceric.10G031100 not classified & original description: pacid=50612341... 0.03 OrthoFinder output from all 47 species
Ceric.11G019200.1 Ceric.11G019200 not classified & original description: pacid=50596467... 0.03 OrthoFinder output from all 47 species
Ceric.14G038700.1 Ceric.14G038700 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.16G006400.1 Ceric.16G006400 not classified & original description: pacid=50590241... 0.03 OrthoFinder output from all 47 species
Ceric.17G075500.1 Ceric.17G075500 not classified & original description: pacid=50617952... 0.04 OrthoFinder output from all 47 species
Ceric.21G089400.1 Ceric.21G089400 not classified & original description: pacid=50603367... 0.03 OrthoFinder output from all 47 species
Ceric.25G001500.1 Ceric.25G001500 not classified & original description: pacid=50593180... 0.03 OrthoFinder output from all 47 species
Ceric.37G043200.1 Ceric.37G043200 not classified & original description: pacid=50616612... 0.02 OrthoFinder output from all 47 species
Dac_g10610 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12578 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01720 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13612 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g43569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g51968 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g07924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10732 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g58364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05014 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06741 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g13214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g16774 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14118 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15176 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04423 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25475 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g36335 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03944 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13365 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18868 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18939 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003855 No alias not classified & original description: CDS=1-1500 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g003963 No alias not classified & original description: CDS=1-4017 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006820 No alias not classified & original description: CDS=1-3141 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007662 CRR22 not classified & original description: CDS=517-2514 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011395 No alias not classified & original description: CDS=1-2424 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012786 No alias not classified & original description: CDS=1-3153 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0049.g013724 No alias not classified & original description: CDS=1-1671 0.03 OrthoFinder output from all 47 species
Sam_g27503 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g01164 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g04234 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16921 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17848 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18112 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18788 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g25854 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g56845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00665 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g18900 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006535 cysteine biosynthetic process from serine IEP HCCA
BP GO:0006563 L-serine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0009001 serine O-acetyltransferase activity IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016412 serine O-acyltransferase activity IEP HCCA
MF GO:0016413 O-acetyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 344 370
IPR002885 Pentatricopeptide_repeat 851 878
IPR002885 Pentatricopeptide_repeat 689 712
IPR002885 Pentatricopeptide_repeat 489 519
IPR002885 Pentatricopeptide_repeat 460 486
IPR002885 Pentatricopeptide_repeat 600 646
IPR002885 Pentatricopeptide_repeat 152 198
IPR002885 Pentatricopeptide_repeat 717 763
IPR002885 Pentatricopeptide_repeat 252 299
No external refs found!