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  5. Pir_g15172

Pir_g15172 (RNPS1, SR45)


Aliases : RNPS1, SR45

Description : component *(RNPS1) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g15172
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
Aev_g05804 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Als_g12115 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aob_g01051 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aob_g29271 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dcu_g05318 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Dde_g10398 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Ehy_g01393 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Mp4g11580.1 RNPS1, SR45 component RNPS1 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Msp_g10775 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Nbi_g08317 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ore_g10464 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g36997 No alias component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Solyc10g005590.4.1 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Spa_g07702 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Tin_g01053 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 96 162
No external refs found!