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  5. Pir_g13632

Pir_g13632


Description : component *(ADA3) of SAGA transcription co-activator complex & original description: none


Gene families : OG0002109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g13632

Extended
Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00010980 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
AT2G19390 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
AT4G29790 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
AT5G22450 No alias unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:... 0.04 OrthoFinder output from all 47 species
Als_g21244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29245 No alias component *(ADA3) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Als_g49585 No alias component *(ADA3) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Aob_g10990 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Aob_g10991 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aspi01Gene32698.t1 Aspi01Gene32698 component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015784 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ceric.03G067900.1 Ceric.03G067900 component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ceric.34G015100.1 Ceric.34G015100 component *(ADA3) of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Dac_g32253 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Dcu_g46147 No alias component *(ADA3) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Ehy_g12120 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ehy_g31344 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
GSVIVT01015158001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.06 OrthoFinder output from all 47 species
GSVIVT01036136001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
LOC_Os01g73620.1 LOC_Os01g73620 component ADA3 of SAGA transcription co-activator complex 0.05 OrthoFinder output from all 47 species
LOC_Os05g01690.1 LOC_Os05g01690component ADA3 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
LOC_Os05g28300.1 LOC_Os05g28300 component ADA3 of SAGA transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Len_g10698 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Lfl_g10282 No alias component *(ADA3) of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Lfl_g27993 No alias component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
MA_107341g0010 No alias component ADA3 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Mp1g06630.1 No alias component ADA3 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
Msp_g14668 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Nbi_g18247 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ore_g18819 No alias component *(ADA3) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Pir_g43188 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011817 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Sam_g48948 No alias component *(ADA3) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Smo407119 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.06 OrthoFinder output from all 47 species
Solyc07g040980.3.1 Solyc07g040980 component ADA3 of SAGA transcription co-activator complex 0.06 OrthoFinder output from all 47 species
Solyc11g006960.2.1 Solyc11g006960 component ADA3 of SAGA transcription co-activator complex 0.06 OrthoFinder output from all 47 species
Spa_g26204 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Zm00001e018678_P002 Zm00001e018678 component ADA3 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
Zm00001e027665_P001 Zm00001e027665 component ADA3 of SAGA transcription co-activator complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR019340 Histone_AcTrfase_su3 972 1033
No external refs found!