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  5. Pir_g12817

Pir_g12817


Description : regulatory protein *(SCAMP) of exocytic trafficking & original description: none


Gene families : OG0001155 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001155_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g12817

Target Alias Description ECC score Gene Family Method Actions
AT1G61250 SC3 secretory carrier 3 0.03 OrthoFinder output from all 47 species
Ala_g08939 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Als_g23925 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene63583.t1 Aspi01Gene63583 regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Cba_g00888 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.04 OrthoFinder output from all 47 species
Cre02.g089900 No alias Secretory carrier-associated membrane protein 5 OS=Oryza... 0.01 OrthoFinder output from all 47 species
Dcu_g02657 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Ehy_g05654 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Ehy_g09743 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Gb_00347 No alias Secretory carrier-associated membrane protein OS=Pisum... 0.02 OrthoFinder output from all 47 species
LOC_Os01g57220.1 LOC_Os01g57220 Secretory carrier-associated membrane protein 2 OS=Oryza... 0.02 OrthoFinder output from all 47 species
LOC_Os03g38590.1 LOC_Os03g38590 Secretory carrier-associated membrane protein 4 OS=Oryza... 0.03 OrthoFinder output from all 47 species
LOC_Os08g06440.1 LOC_Os08g06440 Secretory carrier-associated membrane protein 6 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Len_g16245 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Lfl_g02844 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Nbi_g05251 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Ppi_g11149 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.04 OrthoFinder output from all 47 species
Ppi_g15914 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014094 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Smo141352 No alias Secretory carrier-associated membrane protein 1 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Solyc10g009180.3.1 SC3, Solyc10g009180 Secretory carrier-associated membrane protein 3... 0.05 OrthoFinder output from all 47 species
Spa_g04692 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.04 OrthoFinder output from all 47 species
Spa_g08939 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Spa_g30096 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Tin_g08478 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Zm00001e004899_P001 SC3, Zm00001e004899 Secretory carrier-associated membrane protein 4 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Zm00001e010563_P001 Zm00001e010563 Secretory carrier-associated membrane protein 1 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Zm00001e019630_P002 Zm00001e019630 Secretory carrier-associated membrane protein 2 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Zm00001e027375_P001 Zm00001e027375 Secretory carrier-associated membrane protein 3 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Zm00001e035266_P003 Zm00001e035266 Secretory carrier-associated membrane protein 1 OS=Oryza... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005047 signal recognition particle binding IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005785 signal recognition particle receptor complex IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR007273 SCAMP 110 281
No external refs found!