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  5. Pir_g11394

Pir_g11394 (Tudor1, AtTudor1, TSN1)


Aliases : Tudor1, AtTudor1, TSN1

Description : mRNA endoribonuclease *(TSN) & original description: none


Gene families : OG0004117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g11394

Target Alias Description ECC score Gene Family Method Actions
Als_g01168 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g18577 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10898 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22914 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021357.71 TSN2, Tudor2, AtTudor2 RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder output from all 47 species
Dac_g32549 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005677001 Tudor1, AtTudor1, TSN1 RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Lfl_g16056 Tudor1, AtTudor1, TSN1 mRNA endoribonuclease *(TSN) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g29037 TSN2, Tudor2, AtTudor2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc03g118010.4.1 Tudor1,... ribonuclease (TSN) 0.04 OrthoFinder output from all 47 species
Spa_g28087 Tudor1, AtTudor1, TSN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0004107 chorismate synthase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004535 poly(A)-specific ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR002999 Tudor 754 873
IPR016071 Staphylococal_nuclease_OB-fold 647 734
IPR016071 Staphylococal_nuclease_OB-fold 35 143
IPR016071 Staphylococal_nuclease_OB-fold 263 360
IPR016071 Staphylococal_nuclease_OB-fold 877 988
No external refs found!