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  5. Pir_g11390

Pir_g11390


Description : pre-mRNA splicing factor *(RBM25) & original description: none


Gene families : OG0002875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g11390
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267030 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Als_g56861 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32231 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g58521 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.04 OrthoFinder output from all 47 species
Cre08.g375084 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g39951 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31973 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39469 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14073 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40496 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09240 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16365 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g18982 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 66 135
IPR002483 PWI_dom 740 803
No external refs found!