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  5. Pir_g10968

Pir_g10968 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA biogenesis complex & original description: none


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g10968

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00026p00051870 DCL4, ATDCL4,... RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.02 OrthoFinder output from all 47 species
Aspi01Gene47448.t2 DCL1, CAF,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z315900.1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.01 OrthoFinder output from all 47 species
LOC_Os09g14610.1 ATDCL2, DCL2,... Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp.... 0.01 OrthoFinder output from all 47 species
Nbi_g25122 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo86110 DCL1, CAF,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 OrthoFinder output from all 47 species
Tin_g25551 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR003100 PAZ_dom 1159 1290
IPR001650 Helicase_C 600 717
IPR006935 Helicase/UvrB_N 193 363
IPR000999 RNase_III_dom 1327 1483
IPR000999 RNase_III_dom 1559 1672
No external refs found!