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  5. Pir_g10878

Pir_g10878


Description : mRNA stability factor *(CRP1) & original description: none


Gene families : OG0007882 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007882_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g10878

Target Alias Description ECC score Gene Family Method Actions
AT5G42310 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g22401 No alias mRNA stability factor *(CRP1) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.1Z098800.1 Ceric.1Z098800 mRNA stability factor *(CRP1) & original description:... 0.03 OrthoFinder output from all 47 species
Gb_11328 No alias plastidial mRNA processing factor (CRP1) 0.03 OrthoFinder output from all 47 species
Len_g13834 No alias mRNA stability factor *(CRP1) & original description: none 0.03 OrthoFinder output from all 47 species
Mp5g09810.1 No alias plastidial mRNA processing factor (CRP1) 0.03 OrthoFinder output from all 47 species
Sam_g52447 No alias mRNA stability factor *(CRP1) & original description: none 0.02 OrthoFinder output from all 47 species
Smo135281 No alias Pentatricopeptide repeat-containing protein At5g42310,... 0.02 OrthoFinder output from all 47 species
Solyc08g045850.3.1 Solyc08g045850 plastidial mRNA processing factor (CRP1) 0.02 OrthoFinder output from all 47 species
Spa_g22309 No alias mRNA stability factor *(CRP1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 310 483
IPR002885 Pentatricopeptide_repeat 620 651
IPR002885 Pentatricopeptide_repeat 486 515
IPR002885 Pentatricopeptide_repeat 697 722
IPR002885 Pentatricopeptide_repeat 661 690
IPR002885 Pentatricopeptide_repeat 275 304
IPR002885 Pentatricopeptide_repeat 521 550
IPR002885 Pentatricopeptide_repeat 727 764
IPR002885 Pentatricopeptide_repeat 552 599
No external refs found!