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  5. Pir_g10613

Pir_g10613


Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g10613

Target Alias Description ECC score Gene Family Method Actions
Adi_g008851 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074839 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102060 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g43317 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene03403.t1 Aspi01Gene03403 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0591.g078731 No alias not classified & original description: CDS=293-1048 0.03 OrthoFinder output from all 47 species
GSVIVT01038141001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os11g38800.1 LOC_Os11g38800 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Msp_g06322 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01818 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g09629 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019260 No alias E3 ubiquitin ligase & original description: CDS=708-1604 0.02 OrthoFinder output from all 47 species
Zm00001e021220_P001 Zm00001e021220 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e031477_P002 Zm00001e031477 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR022143 DUF3675 149 262
IPR011016 Znf_RING-CH 97 142
No external refs found!