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  5. Pir_g10175

Pir_g10175 (LSH4)


Aliases : LSH4

Description : plant-specific ALOG-type transcription factor & original description: none


Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g10175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00153p00050640 LSH6,... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.02 OrthoFinder output from all 47 species
Adi_g024284 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ala_g06360 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g27588 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.14G090800.1 LSH6, Ceric.14G090800 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.03 OrthoFinder output from all 47 species
GSVIVT01024677001 LSH6 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.02 OrthoFinder output from all 47 species
LOC_Os01g61310.1 LSH6, LOC_Os01g61310 Protein G1-like7 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
MA_211369g0010 LSH3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 OrthoFinder output from all 47 species
Msp_g05594 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Nbi_g02008 LSH4 plant-specific ALOG-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Nbi_g04394 LSH6 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Nbi_g26624 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g20213 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0158.g023794 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g18334 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g22416 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e013711_P001 LSH4, Zm00001e013711 Protein G1-like2 OS=Oryza sativa subsp. indica... 0.02 OrthoFinder output from all 47 species
Zm00001e030343_P002 LSH4, Zm00001e030343 Protein G1-like2 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR006936 ALOG_dom 62 179
No external refs found!