Pir_g09993

Description : assembly factor involved in RuBisCo assembly *(RAF2) & original description: none

Gene families : OG0002088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g09993
Cluster	HCCA: Cluster_226

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00048p00030920	evm_27.TU.AmTr_v1...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.04	OrthoFinder output from all 47 species
AT5G51110	No alias	Transcriptional coactivator/pterin dehydratase	0.04	OrthoFinder output from all 47 species
Als_g04074	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.03	OrthoFinder output from all 47 species
Aob_g04878	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.06	OrthoFinder output from all 47 species
Azfi_s0383.g067436	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.03	OrthoFinder output from all 47 species
Cre01.g049000	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.03	OrthoFinder output from all 47 species
Dac_g02570	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.05	OrthoFinder output from all 47 species
Dde_g33347	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species
Ehy_g03244	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.07	OrthoFinder output from all 47 species
GSVIVT01013845001	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.07	OrthoFinder output from all 47 species
Gb_11396	No alias	RAF2 assembly factor involved in RuBisCo assembly	0.04	OrthoFinder output from all 47 species
Len_g16882	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species
Lfl_g27503	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.02	OrthoFinder output from all 47 species
Mp2g24300.1	No alias	RAF2 assembly factor involved in RuBisCo assembly	0.06	OrthoFinder output from all 47 species
Msp_g42207	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.05	OrthoFinder output from all 47 species
Nbi_g03969	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.07	OrthoFinder output from all 47 species
Ppi_g04239	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.05	OrthoFinder output from all 47 species
Solyc03g094175.1.1	Solyc03g094175	RAF2 assembly factor involved in RuBisCo assembly	0.05	OrthoFinder output from all 47 species
Solyc03g094177.1.1	Solyc03g094177	RAF2 assembly factor involved in RuBisCo assembly	0.05	OrthoFinder output from all 47 species
Spa_g06443	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019751	polyol metabolic process	None	Extended
BP	GO:0034311	diol metabolic process	None	Extended
BP	GO:0034312	diol biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042558	pteridine-containing compound metabolic process	None	Extended
BP	GO:0042559	pteridine-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046146	tetrahydrobiopterin metabolic process	None	Extended
BP	GO:0046165	alcohol biosynthetic process	None	Extended
BP	GO:0046173	polyol biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001533	Pterin_deHydtase	121	210

External Links

No external refs found!

Pir_g09993

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation