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  5. Pir_g08671

Pir_g08671 (RAD23B, RAD23)


Aliases : RAD23B, RAD23

Description : ubiquitin-proteasome shuttle factor *(RAD23) & original description: none


Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g08671

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00156p00078120 RAD23D,... Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Adi_g058727 RAD23A ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Adi_g058741 RAD23D ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Als_g51273 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Aop_g10404 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.21 RAD23D Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g06924 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Dde_g08965 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os02g08300.1 RAD23B, RAD23,... shuttle protein (RAD23) 0.02 OrthoFinder output from all 47 species
MA_47454g0010 RAD23D shuttle protein (RAD23) 0.03 OrthoFinder output from all 47 species
Mp1g26290.1 RAD23B, RAD23 shuttle protein (RAD23) 0.03 OrthoFinder output from all 47 species
Nbi_g35763 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Ore_g18647 RAD23A ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Ore_g27319 RAD23-3, RAD23C ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g63807 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Smo77427 RAD23B, RAD23 Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Smo82644 RAD23B, RAD23 Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Spa_g18087 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Tin_g19292 RAD23B, RAD23 ubiquiTin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e034084_P002 RAD23-3, RAD23C,... shuttle protein (RAD23) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR015360 XPC-bd 283 338
IPR015940 UBA 362 397
IPR015940 UBA 167 204
IPR000626 Ubiquitin-like_dom 3 76
No external refs found!