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  5. Pir_g07871

Pir_g07871


Description : not classified & original description: none


Gene families : OG0000989 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000989_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g07871

Target Alias Description ECC score Gene Family Method Actions
AT5G45480 No alias Protein of unknown function (DUF594) 0.03 OrthoFinder output from all 47 species
LOC_Os04g07040.1 LOC_Os04g07040 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012026 No alias not classified & original description: CDS=1-2097 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR025315 DUF4220 32 300
No external refs found!