1. Home
  2. Species
  3. Pleocnemia irregularis
  4. Sequence
  5. Pir_g07531

Pir_g07531 (EMB976)


Aliases : EMB976

Description : plastidial splicing factor *(PDM4) & original description: none


Gene families : OG0007469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007469_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g07531

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00132600 EMB976,... Pentatricopeptide repeat-containing protein At5g27270... 0.02 OrthoFinder output from all 47 species
Cba_g01274 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11292 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024409001 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 363 393
IPR002885 Pentatricopeptide_repeat 670 698
IPR002885 Pentatricopeptide_repeat 329 358
IPR002885 Pentatricopeptide_repeat 398 427
IPR002885 Pentatricopeptide_repeat 575 596
IPR002885 Pentatricopeptide_repeat 539 567
IPR002885 Pentatricopeptide_repeat 444 463
IPR002885 Pentatricopeptide_repeat 190 218
IPR002885 Pentatricopeptide_repeat 227 251
IPR002885 Pentatricopeptide_repeat 257 302
No external refs found!