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  5. Pir_g06028

Pir_g06028 (TAF15b)


Aliases : TAF15b

Description : not classified & original description: none


Gene families : OG0003283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003283_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g06028

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00153p00073330 TAF15b,... Transcription initiation factor TFIID subunit 15b... 0.05 OrthoFinder output from all 47 species
Als_g40095 TAF15b not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g03332 TAF15b not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g13937 TAF15b not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.19G014000.1 TAF15b, Ceric.19G014000 not classified & original description: pacid=50575256... 0.03 OrthoFinder output from all 47 species
Dcu_g12088 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46266 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14874 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g07070.2 TAF15b, LOC_Os01g07070 Transcription initiation factor TFIID subunit 15b... 0.02 OrthoFinder output from all 47 species
Len_g23680 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g36395 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp7g03900.1 TAF15b Transcription initiation factor TFIID subunit 15b... 0.02 OrthoFinder output from all 47 species
Pnu_g11171 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g18151 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39313 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22431 TAF15b not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g23356 TAF15b not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e016824_P001 TAF15b, Zm00001e016824 Transcription initiation factor TFIID subunit 15b... 0.02 OrthoFinder output from all 47 species
Zm00001e025837_P001 TAF15b, Zm00001e025837 Transcription initiation factor TFIID subunit 15b... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 364 393
IPR001876 Znf_RanBP2 80 110
No external refs found!