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  5. Pir_g02489

Pir_g02489


Description : scaffold nucleoporin of nuclear pore complex *(RAE1) & original description: none


Gene families : OG0004854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004854_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g02489

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0174.g055933 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.04 OrthoFinder output from all 47 species
Cba_g10923 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.03 OrthoFinder output from all 47 species
MA_27152g0010 No alias Protein RAE1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Sam_g09907 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 111 140
IPR001680 WD40_repeat 27 53
No external refs found!