Pir_g02308

Description : snRNP-associated protein *(SR140) & original description: none

Gene families : OG0003274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003274_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g02308

Target	Alias	Description	ECC score	Gene Family Method
Adi_g011558	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g059804	No alias	snRNP-associated protein *(SR140) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g02691	No alias	snRNP-associated protein *(SR140) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g01963	No alias	snRNP-associated protein *(SR140) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g42378	No alias	snRNP-associated protein *(SR140) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g21519	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0003.g008157	No alias	snRNP-associated protein *(SR140) & original...	0.03	OrthoFinder output from all 47 species
Cba_g11316	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g04985	No alias	snRNP-associated protein *(SR140) & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g10046	No alias	snRNP-associated protein *(SR140) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g29046	No alias	snRNP-associated protein *(SR140) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01035985001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.05	OrthoFinder output from all 47 species
Gb_18824	No alias	snRNP-associated protein (SR140)	0.02	OrthoFinder output from all 47 species
Len_g31360	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Mp6g17130.1	No alias	snRNP-associated protein (SR140)	0.03	OrthoFinder output from all 47 species
Msp_g14289	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g09321	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19248	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g004998	No alias	snRNP-associated protein *(SR140) & original...	0.04	OrthoFinder output from all 47 species
Sam_g08483	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g025280.4.1	Solyc03g025280	snRNP-associated protein (SR140)	0.02	OrthoFinder output from all 47 species
Tin_g07962	No alias	snRNP-associated protein *(SR140) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e013823_P001	Zm00001e013823	snRNP-associated protein (SR140)	0.03	OrthoFinder output from all 47 species
Zm00001e013828_P003	Zm00001e013828	snRNP-associated protein (SR140)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016151	nickel cation binding	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	HCCA
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	HCCA
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	216	287
IPR006569	CID_dom	483	611
IPR013170	mRNA_splic_Cwf21_dom	880	926
IPR000061	Surp	363	415

External Links

No external refs found!

Pir_g02308

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation