Pir_g02305

Description : subunit beta of cargo adaptor F-subcomplex & original description: none

Gene families : OG0002649 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002649_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g02305

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00238440	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	OrthoFinder output from all 47 species
AT4G31480	No alias	Coatomer, beta subunit	0.04	OrthoFinder output from all 47 species
AT4G31490	No alias	Coatomer, beta subunit	0.04	OrthoFinder output from all 47 species
Aev_g08571	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Ala_g12957	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.06	OrthoFinder output from all 47 species
Als_g16565	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Als_g31327	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g44998	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g05342	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.02	OrthoFinder output from all 47 species
Aop_g08029	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0279.g062259	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Ceric.04G093900.1	Ceric.04G093900	subunit beta of cargo adaptor F-subcomplex & original...	0.02	OrthoFinder output from all 47 species
Ceric.24G063400.1	Ceric.24G063400	subunit beta of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
Cre04.g217921	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.06	OrthoFinder output from all 47 species
Dcu_g03132	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.02	OrthoFinder output from all 47 species
Dde_g09656	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
Ehy_g08642	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01035511001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	OrthoFinder output from all 47 species
LOC_Os01g17430.1	LOC_Os01g17430	subunit beta of cargo adaptor F-subcomplex	0.05	OrthoFinder output from all 47 species
LOC_Os11g07280.1	LOC_Os11g07280	subunit beta of cargo adaptor F-subcomplex	0.06	OrthoFinder output from all 47 species
Len_g12104	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.03	OrthoFinder output from all 47 species
MA_10431517g0010	No alias	subunit beta of cargo adaptor F-subcomplex	0.03	OrthoFinder output from all 47 species
MA_10432097g0020	No alias	subunit beta of cargo adaptor F-subcomplex	0.03	OrthoFinder output from all 47 species
MA_230138g0010	No alias	subunit beta of cargo adaptor F-subcomplex	0.03	OrthoFinder output from all 47 species
MA_704359g0010	No alias	Coatomer subunit beta-1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp5g08450.1	No alias	subunit beta of cargo adaptor F-subcomplex	0.04	OrthoFinder output from all 47 species
Msp_g15814	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Nbi_g02428	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.06	OrthoFinder output from all 47 species
Ore_g17465	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g30253	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.02	OrthoFinder output from all 47 species
Ppi_g17439	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011640	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.02	OrthoFinder output from all 47 species
Smo160340	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	OrthoFinder output from all 47 species
Solyc01g007150.3.1	Solyc01g007150	subunit beta of cargo adaptor F-subcomplex	0.03	OrthoFinder output from all 47 species
Solyc10g081920.2.1	Solyc10g081920	subunit beta of cargo adaptor F-subcomplex	0.05	OrthoFinder output from all 47 species
Spa_g12851	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.08	OrthoFinder output from all 47 species
Spa_g56532	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Tin_g04740	No alias	subunit beta of cargo adaptor F-subcomplex & original...	0.04	OrthoFinder output from all 47 species
Zm00001e009041_P001	Zm00001e009041	subunit beta of cargo adaptor F-subcomplex	0.03	OrthoFinder output from all 47 species
Zm00001e017416_P001	Zm00001e017416	subunit beta of cargo adaptor F-subcomplex	0.04	OrthoFinder output from all 47 species
Zm00001e025465_P001	Zm00001e025465	subunit beta of cargo adaptor F-subcomplex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030126	COPI vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008417	fucosyltransferase activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0018279	protein N-linked glycosylation via asparagine	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002553	Clathrin/coatomer_adapt-like_N	23	482
IPR011710	Coatomer_bsu_C	680	818
IPR029446	COPB1_appendage_platform_dom	824	951

External Links

No external refs found!

Pir_g02305

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation