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  5. Pir_g02273

Pir_g02273


Description : not classified & original description: none


Gene families : OG0002687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002687_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g02273

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00201p00015360 evm_27.TU.AmTr_v1... Cold shock protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g088448 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10123 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g00814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g30082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27254 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g054330.3.1 Solyc10g054330 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g46327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 44 60
IPR001878 Znf_CCHC 216 231
IPR001878 Znf_CCHC 162 177
IPR001878 Znf_CCHC 143 158
IPR001878 Znf_CCHC 196 210
IPR001878 Znf_CCHC 124 140
No external refs found!