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  5. Pir_g00281

Pir_g00281


Description : cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7) & original description: none


Gene families : OG0006155 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006155_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g00281
Cluster HCCA: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00150890 PDE225, PTAC7,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
AT5G24314 PDE225, PTAC7 plastid transcriptionally active7 0.03 OrthoFinder output from all 47 species
Aev_g24666 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.03 OrthoFinder output from all 47 species
Azfi_s0048.g030444 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.03 OrthoFinder output from all 47 species
Dcu_g13646 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.05 OrthoFinder output from all 47 species
Dde_g22531 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.03 OrthoFinder output from all 47 species
Gb_37961 PDE225, PTAC7 TAC7 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Len_g05638 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.02 OrthoFinder output from all 47 species
Smo437596 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Spa_g03374 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.03 OrthoFinder output from all 47 species
Zm00001e028140_P001 PDE225, PTAC7,... TAC7 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!