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  5. Len_g59596

Len_g59596


Description : component *(CAP-D2A) of condensin I complex & original description: none


Gene families : OG0004821 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004821_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g59596
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00063p00018970 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.1 OrthoFinder output from all 47 species
AT3G57060 No alias binding 0.08 OrthoFinder output from all 47 species
Aev_g21439 No alias component *(CAP-D2A) of condensin I complex & original... 0.03 OrthoFinder output from all 47 species
Ala_g26011 No alias component *(CAP-D2A) of condensin I complex & original... 0.09 OrthoFinder output from all 47 species
Als_g16422 No alias component *(CAP-D2A) of condensin I complex & original... 0.08 OrthoFinder output from all 47 species
Aop_g66013 No alias component *(CAP-D2A) of condensin I complex & original... 0.1 OrthoFinder output from all 47 species
Aspi01Gene72377.t1 Aspi01Gene72377 component *(CAP-D2A) of condensin I complex & original... 0.05 OrthoFinder output from all 47 species
Ceric.08G005100.1 Ceric.08G005100 component *(CAP-D2A) of condensin I complex & original... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021070.118 No alias Cell cycle.mitosis and meiosis.chromatin... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021070.119 No alias Cell cycle.mitosis and meiosis.chromatin... 0.04 OrthoFinder output from all 47 species
Cre10.g432500 No alias Cell cycle.mitosis and meiosis.chromatin... 0.03 OrthoFinder output from all 47 species
GSVIVT01033598001 No alias Cell cycle.mitosis and meiosis.chromatin... 0.07 OrthoFinder output from all 47 species
Gb_21478 No alias component CAP-D2A of condensin I complex 0.09 OrthoFinder output from all 47 species
LOC_Os07g46540.1 LOC_Os07g46540 component CAP-D2A of condensin I complex 0.04 OrthoFinder output from all 47 species
Lfl_g38611 No alias component *(CAP-D2A) of condensin I complex & original... 0.06 OrthoFinder output from all 47 species
MA_10427588g0010 No alias component CAP-D2A of condensin I complex 0.08 OrthoFinder output from all 47 species
MA_10427588g0020 No alias component CAP-D2A of condensin I complex. serine carboxypeptidase 0.07 OrthoFinder output from all 47 species
Mp3g03650.1 No alias component CAP-D2A of condensin I complex 0.08 OrthoFinder output from all 47 species
Msp_g14231 No alias component *(CAP-D2A) of condensin I complex & original... 0.07 OrthoFinder output from all 47 species
Nbi_g04469 No alias component *(CAP-D2A) of condensin I complex & original... 0.1 OrthoFinder output from all 47 species
Ppi_g31657 No alias component *(CAP-D2A) of condensin I complex & original... 0.03 OrthoFinder output from all 47 species
Spa_g41134 No alias component *(CAP-D2A) of condensin I complex & original... 0.09 OrthoFinder output from all 47 species
Tin_g11231 No alias component *(CAP-D2A) of condensin I complex & original... 0.06 OrthoFinder output from all 47 species
Zm00001e035766_P001 Zm00001e035766 component CAP-D2A of condensin I complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR024324 Condensin_cplx_su1_N 88 255
IPR032682 Cnd1_C 1004 1165
No external refs found!