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  5. Len_g58637

Len_g58637


Description : STAR-type post-transcriptionally regulatory factor & original description: none


Gene families : OG0001245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g58637
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00192730 evm_27.TU.AmTr_v1... KH domain-containing protein At1g09660/At1g09670... 0.04 OrthoFinder output from all 47 species
AT5G56140 No alias RNA-binding KH domain-containing protein 0.03 OrthoFinder output from all 47 species
Dac_g02693 No alias STAR-type post-transcriptionally regulatory factor &... 0.03 OrthoFinder output from all 47 species
GSVIVT01014762001 No alias KH domain-containing protein At5g56140 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01029865001 No alias KH domain-containing protein At3g08620 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
MA_123641g0010 No alias KH domain-containing protein At4g26480 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g04444 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Solyc09g031930.3.1 Solyc09g031930 KH domain-containing protein At2g38610 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR032377 STAR_dimer 47 79
IPR004088 KH_dom_type_1 155 204
No external refs found!